Directed ultrafast conformational changes accompany electron transfer in a photolyase as resolved by serial crystallography.
Andrea CelliniMadan Kumar ShankarAmke NimmrichLeigh Anna HuntLeonardo MonrroyJennifer MutisyaAntonia FurrerEmma V BealeMelissa CarrilloTek Narsingh MallaPiotr MajLidija VrhovacFlorian S N DworkowskiClaudio CirelliPhilip J M JohnsonDmitry OzerovEmina A StojkovicLeif HammarströmCamila BacellarJoerg StandfussMichal MajMarius SchmidtTobias WeinertJanne A IhalainenWeixiao Yuan WahlgrenSebastian WestenhoffPublished in: Nature chemistry (2024)
Charge-transfer reactions in proteins are important for life, such as in photolyases which repair DNA, but the role of structural dynamics remains unclear. Here, using femtosecond X-ray crystallography, we report the structural changes that take place while electrons transfer along a chain of four conserved tryptophans in the Drosophila melanogaster (6-4) photolyase. At femto- and picosecond delays, photoreduction of the flavin by the first tryptophan causes directed structural responses at a key asparagine, at a conserved salt bridge, and by rearrangements of nearby water molecules. We detect charge-induced structural changes close to the second tryptophan from 1 ps to 20 ps, identifying a nearby methionine as an active participant in the redox chain, and from 20 ps around the fourth tryptophan. The photolyase undergoes highly directed and carefully timed adaptations of its structure. This questions the validity of the linear solvent response approximation in Marcus theory and indicates that evolution has optimized fast protein fluctuations for optimal charge transfer.
Keyphrases
- electron transfer
- drosophila melanogaster
- transcription factor
- single molecule
- high resolution
- molecular dynamics
- amino acid
- high glucose
- circulating tumor
- molecular dynamics simulations
- diabetic rats
- ionic liquid
- protein protein
- mass spectrometry
- oxidative stress
- small molecule
- drug induced
- solar cells
- dual energy
- computed tomography
- quantum dots
- neural network