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Pooling size sorted Malaise trap fractions to maximize taxon recovery with metabarcoding.

Vasco ElbrechtSarah J BourlatThomas HörrenAngie LindnerAdriana MordenteNiklas W NollLivia SchäfflerMartin SorgVera M A Zizka
Published in: PeerJ (2021)
We demonstrate that size fractionation of Malaise trap bulk samples can increase taxon recovery. While results show distinct patterns, the lack of statistical support due to the limited number of samples processed is a limitation. Due to increased speed and lower risk of cross-contamination as well as specimen damage we recommend wet sieving and proportional pooling of the lysates in favour of the small size fraction (80-90% volume). However, for large-scale projects with time constraints, increasing sequencing depth is an alternative solution.
Keyphrases
  • single cell
  • quality improvement