The MOBSTER R package for tumour subclonal deconvolution from bulk DNA whole-genome sequencing data.
Giulio CaravagnaGuido SanguinettiTrevor A GrahamAndrea SottorivaPublished in: BMC bioinformatics (2020)
We present the mobster package for tumour subclonal deconvolution from bulk sequencing, the first approach to integrate Machine Learning and Population Genetics which can explicitly model co-existing neutral and positive selection in cancer. We showcase the analysis of two datasets, one simulated and one from a breast cancer patient, and overview all package functionalities.