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The first genome assembly of fungal pathogen Pyrenophora tritici-repentis race 1 isolate using Oxford Nanopore MinION sequencing.

Paula M MoolhuijzenPao Theen SeeCaroline S Moffat
Published in: BMC research notes (2021)
The genome of Ptr134 sequenced on a MinION using ONT was assembled into 28 contiguous sequences with a total length of 40.79 Mb and GC content of 50.81%. The long-read assembly provided 6.79 Mb of new sequence and 2846 extra annotated protein coding genes as compared to the previous short-read assembly. This improved genome sequence represents near complete chromosomes, an important resource for large scale and pan genomic comparative analyses.
Keyphrases
  • genome wide
  • single molecule
  • copy number
  • single cell
  • binding protein
  • mass spectrometry
  • bioinformatics analysis
  • genome wide analysis