ScType enables fast and accurate cell type identification from spatial transcriptomics data.

Kristen NaderMisra TasciAleksandr IanevskiAndrew EricksonEmmy W VerschurenTero Aittokallio Mitro Miihkinen

Published in: Bioinformatics (Oxford, England) (2024)

scType source R and python codes for spatial data are openly available in GitHub (https://github.com/kris-nader/sp-type or https://github.com/kris-nader/sc-type-py). Step-by-step tutorials for R and python spatial data analysis can be found in https://github.com/kris-nader/sp-type and https://github.com/kris-nader/sc-type-py/blob/main/spatial_tutorial.md, respectively.

Keyphrases

data analysis
electronic health record
big data
machine learning
high resolution