Combined Deep Learning and Classical Potential Approach for Modeling Diffusion in UiO-66.
Siddarth K AcharJacob J WardzalaLeonardo BernasconiLinfeng ZhangJ Karl JohnsonPublished in: Journal of chemical theory and computation (2022)
Modeling of diffusion of adsorbates through porous materials with atomistic molecular dynamics (MD) can be a challenging task if the flexibility of the adsorbent needs to be included. This is because potentials need to be developed that accurately account for the motion of the adsorbent in response to the presence of adsorbate molecules. In this work, we show that it is possible to use accurate machine learning atomistic potentials for metal-organic frameworks in concert with classical potentials for adsorbates to accurately compute diffusivities though a hybrid potential approach. As a proof-of-concept, we have developed an accurate deep learning potential (DP) for UiO-66, a metal-organic framework, and used this DP to perform hybrid potential simulations, modeling diffusion of neon and xenon through the crystal. The adsorbate-adsorbate interactions were modeled with Lennard-Jones (LJ) potentials, the adsorbent-adsorbent interactions were described by the DP, and the adsorbent-adsorbate interactions used LJ cross-interactions. Thus, our hybrid potential allows for adsorbent-adsorbate interactions with classical potentials but models the response of the adsorbent to the presence of the adsorbate through near-DFT accuracy DPs. This hybrid approach does not require refitting the DP for new adsorbates. We calculated self-diffusion coefficients for Ne in UiO-66 from DFT-MD, our hybrid DP/LJ approach, and from two different classical potentials for UiO-66. Our DP/LJ results are in excellent agreement with DFT-MD. We modeled diffusion of Xe in UiO-66 with DP/LJ and a classical potential. Diffusion of Xe in UiO-66 is about a factor of 30 slower than that of Ne, so it is not computationally feasible to compute Xe diffusion with DFT-MD. Our hybrid DP-classical potential approach can be applied to other MOFs and other adsorbates, making it possible to use an accurate DP generated from DFT simulations of an empty adsorbent in concert with existing classical potentials for adsorbates to model adsorption and diffusion within the porous material, including adsorbate-induced changes to the framework.
Keyphrases
- metal organic framework
- molecular dynamics
- density functional theory
- deep learning
- aqueous solution
- machine learning
- solid phase extraction
- human health
- molecular docking
- molecular dynamics simulations
- endothelial cells
- climate change
- convolutional neural network
- mass spectrometry
- high glucose
- simultaneous determination
- diabetic rats