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When homologous sequences meet structural decoys: Accurate contact prediction by tFold in CASP14-(tFold for CASP14 contact prediction).

Tao ShenJiaxiang WuHaidong LanLiangzhen ZhengJianguo PeiSheng WangWei LiuJunzhou Huang
Published in: Proteins (2021)
In this paper, we report our tFold framework's performance on the inter-residue contact prediction task in the 14th Critical Assessment of protein Structure Prediction (CASP14). Our tFold framework seamlessly combines both homologous sequences and structural decoys under an ultra-deep network architecture. Squeeze-excitation and axial attention mechanisms are employed to effectively capture inter-residue interactions. In CASP14, our best predictor achieves 41.78% in the averaged top-L precision for long-range contacts for all the 22 free-modeling (FM) targets, and ranked 1st among all the 60 participating teams. The tFold web server is now freely available at: https://drug.ai.tencent.com/console/en/tfold.
Keyphrases
  • dna damage
  • dna repair
  • high resolution
  • artificial intelligence
  • working memory
  • emergency department
  • protein protein
  • binding protein
  • quantum dots
  • electronic health record
  • adverse drug
  • network analysis