Fully Automatic Deep Learning Framework for Pancreatic Ductal Adenocarcinoma Detection on Computed Tomography.
Natália AlvesMegan SchuurmansGeke LitjensJoeran S BosmaJohn HermansHenkjan HuismanPublished in: Cancers (2022)
Early detection improves prognosis in pancreatic ductal adenocarcinoma (PDAC), but is challenging as lesions are often small and poorly defined on contrast-enhanced computed tomography scans (CE-CT). Deep learning can facilitate PDAC diagnosis; however, current models still fail to identify small (<2 cm) lesions. In this study, state-of-the-art deep learning models were used to develop an automatic framework for PDAC detection, focusing on small lesions. Additionally, the impact of integrating the surrounding anatomy was investigated. CE-CT scans from a cohort of 119 pathology-proven PDAC patients and a cohort of 123 patients without PDAC were used to train a nnUnet for automatic lesion detection and segmentation ( nnUnet_T) . Two additional nnUnets were trained to investigate the impact of anatomy integration: (1) segmenting the pancreas and tumor ( nnUnet_TP ), and (2) segmenting the pancreas, tumor, and multiple surrounding anatomical structures ( nnUnet_MS ). An external, publicly available test set was used to compare the performance of the three networks. The nnUnet_MS achieved the best performance, with an area under the receiver operating characteristic curve of 0.91 for the whole test set and 0.88 for tumors <2 cm, showing that state-of-the-art deep learning can detect small PDAC and benefits from anatomy information.
Keyphrases
- deep learning
- computed tomography
- contrast enhanced
- dual energy
- magnetic resonance imaging
- convolutional neural network
- artificial intelligence
- positron emission tomography
- end stage renal disease
- machine learning
- diffusion weighted
- image quality
- magnetic resonance
- newly diagnosed
- chronic kidney disease
- ejection fraction
- prognostic factors
- peritoneal dialysis
- diffusion weighted imaging
- multiple sclerosis
- loop mediated isothermal amplification
- high resolution
- real time pcr
- quantum dots
- atomic force microscopy
- energy transfer