Large-scale informatic analysis to algorithmically identify blood biomarkers of neurological damage.
Grant C O'ConnellMegan L AlderChristine G SmothersJulia H C ChangPublished in: Proceedings of the National Academy of Sciences of the United States of America (2020)
The identification of precision blood biomarkers which can accurately indicate damage to brain tissue could yield molecular diagnostics with the potential to improve how we detect and treat neurological pathologies. However, a majority of candidate blood biomarkers for neurological damage that are studied today are proteins which were arbitrarily proposed several decades before the advent of high-throughput omic techniques, and it is unclear whether they represent the best possible targets relative to the remainder of the human proteome. Here, we leveraged mRNA expression data generated from nearly 12,000 human specimens to algorithmically evaluate over 17,000 protein-coding genes in terms of their potential to produce blood biomarkers for neurological damage based on their expression profiles both across the body and within the brain. The circulating levels of proteins associated with the top-ranked genes were then measured in blood sampled from a diverse cohort of patients diagnosed with a variety of acute and chronic neurological disorders, including ischemic stroke, hemorrhagic stroke, traumatic brain injury, Alzheimer's disease, and multiple sclerosis, and evaluated for their diagnostic performance. Our analysis identifies several previously unexplored candidate blood biomarkers of neurological damage with possible clinical utility, many of which whose presence in blood is likely linked to specific cell-level pathologic processes. Furthermore, our findings also suggest that many frequently cited previously proposed blood biomarkers exhibit expression profiles which could limit their diagnostic efficacy.
Keyphrases
- traumatic brain injury
- multiple sclerosis
- oxidative stress
- cerebral ischemia
- endothelial cells
- stem cells
- atrial fibrillation
- chronic kidney disease
- squamous cell carcinoma
- machine learning
- newly diagnosed
- white matter
- single cell
- subarachnoid hemorrhage
- small molecule
- risk assessment
- transcription factor
- bioinformatics analysis
- radiation therapy
- mesenchymal stem cells
- bone marrow
- lymph node
- brain injury
- prognostic factors
- big data
- extracorporeal membrane oxygenation
- protein protein
- genome wide analysis