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Neural network gradient Hamiltonian Monte Carlo.

Lingge LiAndrew HolbrookBabak ShahbabaPierre Baldi
Published in: Computational statistics (2019)
Hamiltonian Monte Carlo is a widely used algorithm for sampling from posterior distributions of complex Bayesian models. It can efficiently explore high-dimensional parameter spaces guided by simulated Hamiltonian flows. However, the algorithm requires repeated gradient calculations, and these computations become increasingly burdensome as data sets scale. We present a method to substantially reduce the computation burden by using a neural network to approximate the gradient. First, we prove that the proposed method still maintains convergence to the true distribution though the approximated gradient no longer comes from a Hamiltonian system. Second, we conduct experiments on synthetic examples and real data to validate the proposed method.
Keyphrases
  • neural network
  • monte carlo
  • electronic health record
  • big data
  • machine learning
  • risk factors
  • deep learning
  • molecular dynamics
  • data analysis
  • density functional theory