Identifying genetic determinants of complex phenotypes from whole genome sequence data.
George S LongMohammed HussenJonathan DenchStephane Aris-BrosouPublished in: BMC genomics (2019)
Altogether, we demonstrated that ML algorithms can be used to identify genetic determinants in small proteomes (viruses), even when trained on small numbers of individuals. We further showed that our RRF algorithm may deserve more scrutiny, which should be facilitated by the decreasing costs of both sequencing and phenotyping of large cohorts of individuals.