Multifarious Translational Regulation during Replicative Aging in Yeast.
Tianyu ZhaoAsaka ChidaYuichi ShichinoDongwoo ChoiMasaki MizunumaShintaro IwasakiYoshikazu OhyaPublished in: Journal of fungi (Basel, Switzerland) (2022)
Protein synthesis is strictly regulated during replicative aging in yeast, but global translational regulation during replicative aging is poorly characterized. To conduct ribosome profiling during replicative aging, we collected a large number of dividing aged cells using a miniature chemostat aging device. Translational efficiency, defined as the number of ribosome footprints normalized to transcript abundance, was compared between young and aged cells for each gene. We identified more than 700 genes with changes greater than twofold during replicative aging. Increased translational efficiency was observed in genes involved in DNA repair and chromosome organization. Decreased translational efficiency was observed in genes encoding ribosome components, transposon Ty1 and Ty2 genes, transcription factor HAC1 gene associated with the unfolded protein response, genes involved in cell wall synthesis and assembly, and ammonium permease genes. Our results provide a global view of translational regulation during replicative aging, in which the pathways involved in various cell functions are translationally regulated and cause diverse phenotypic changes.
Keyphrases
- genome wide identification
- transcription factor
- genome wide
- dna repair
- cell wall
- induced apoptosis
- copy number
- endoplasmic reticulum stress
- cell cycle arrest
- dna methylation
- single cell
- bioinformatics analysis
- mesenchymal stem cells
- oxidative stress
- cell proliferation
- cell therapy
- rna seq
- dna damage response
- bone marrow
- quality control