Login / Signup

Automated Extraction of Tumor Staging and Diagnosis Information From Surgical Pathology Reports.

Sajjad AbedianEvan T ShollePrakash M AdekkanattuMarika M CusickStephanie E WeinerJonathan E ShoagJim C HuThomas R Campion
Published in: JCO clinical cancer informatics (2021)
The NLP pipeline was developed to extract tumor staging and diagnosis information across multiple cancer subtypes to support the research enterprise in our institution. Although it was not possible to demonstrate generalizability of our NLP pipeline to other institutions, other institutions may find value in adopting a similar NLP approach-and reusing code available at GitHub-to support the oncology research enterprise with elements extracted from surgical pathology reports.
Keyphrases
  • lymph node
  • pet ct
  • papillary thyroid
  • adverse drug
  • palliative care
  • high throughput
  • single cell
  • electronic health record