protti: an R package for comprehensive data analysis of peptide- and protein-centric bottom-up proteomics data.

Jan-Philipp Quast Dina Schuster Paola Picotti

Published in: Bioinformatics advances (2021)

protti is implemented as an open-source R package. Release versions are available via CRAN (https://CRAN.R-project.org/package=protti) and work on all major operating systems. The development version is maintained on GitHub (https://github.com/jpquast/protti). Full documentation including examples is provided in the form of vignettes on our package website (jpquast.github.io/protti/).

Keyphrases

electronic health record
big data
mass spectrometry
quality improvement
machine learning
amino acid
artificial intelligence
label free
deep learning