Moving translational mass spectrometry imaging towards transparent and reproducible data analyses: a case study of an urothelial cancer cohort analyzed in the Galaxy framework.
Melanie Christine FöllVeronika VolkmannKathrin Enderle-AmmourSylvia TimmeKonrad WilhelmDan GuoOlga VitekPeter BronsertOliver SchillingPublished in: Clinical proteomics (2022)
Here, we show that translational MSI data analysis in a fully transparent and reproducible manner is possible and we would like to encourage the community to join our efforts.
Keyphrases
- data analysis
- mass spectrometry
- high resolution
- papillary thyroid
- liquid chromatography
- mental health
- healthcare
- squamous cell
- high grade
- electronic health record
- capillary electrophoresis
- gas chromatography
- urinary tract
- light emitting
- lymph node metastasis
- big data
- machine learning
- artificial intelligence
- young adults
- deep learning
- ms ms
- tandem mass spectrometry
- simultaneous determination