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dictyExpress: a web-based platform for sequence data management and analytics in Dictyostelium and beyond.

Miha StajdoharRafael D RosengartenJanez KokosarLuka JeranDomen BlenkusGad ShaulskyBlaz Zupan
Published in: BMC bioinformatics (2017)
dictyExpress and GenBoard enable broad adoption of next generation sequencing based inquiries by the Dictyostelium research community. Labs without the means to undertake deep sequencing projects can mine the data available to the public. The entire information flow, from raw sequence data to hypothesis testing, can be accomplished in an efficient workspace. The software framework is generalizable and represents a useful approach for any research community. To encourage more wide usage, the backend is open-source, available for extension and further development by bioinformaticians and data scientists.
Keyphrases
  • electronic health record
  • big data
  • healthcare
  • mental health
  • data analysis
  • gene expression
  • artificial intelligence
  • machine learning
  • single cell