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Global histone protein surface accessibility in yeast indicates a uniformly loosely packed genome with canonical nucleosomes.

Luke T MarrJosefina OcampoDavid J ClarkJeffrey Joseph Hayes
Published in: Epigenetics & chromatin (2021)
Overall, our finding that nucleosomes surfaces within S. cerevisiae chromatin are equivalently accessible genome-wide is consistent with a globally uncompacted chromatin structure lacking substantial higher-order organization. However, we find modest differences in accessibility that correlate with chromatin remodelers but not transcription, suggesting chromatin poised for transcription is more accessible than actively transcribed or intergenic regions. In contrast, we find that two internal sites remain inaccessible, suggesting that such non-canonical nucleosome species generated during transcription are rapidly and efficiently converted to canonical nucleosome structure and thus not widely present in native chromatin.
Keyphrases
  • genome wide
  • transcription factor
  • dna methylation
  • dna damage
  • gene expression
  • copy number
  • magnetic resonance
  • escherichia coli
  • magnetic resonance imaging
  • pseudomonas aeruginosa
  • biofilm formation
  • amino acid