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Comparative Molecular Field Analysis Using Molecular Integral Equation Theory.

Samiul M AnsariDavid S Palmer
Published in: Journal of chemical information and modeling (2018)
2017, 57, 1652-1666] Here we extend this idea by introducing probe atoms into the 3DRISM solvent model in order to directly capture other molecular interactions in addition to those related to hydration/dehydration. Benchmark results for six different protein-ligand systems show that CARMa models trained on probe atom descriptors give consistently more accurate predictions than Comparative Molecular Field Analysis (CoMFA) and other common QSAR approaches.
Keyphrases
  • molecular dynamics
  • quantum dots
  • living cells
  • small molecule
  • binding protein
  • amino acid
  • data analysis
  • fluorescent probe
  • structure activity relationship