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Investigating the Spectroscopy of the Gas Phase Guanine-Cytosine Pair: Keto versus Enol Configurations.

Giacomo BottiMichele CeottoRiccardo Conte
Published in: The journal of physical chemistry letters (2023)
We report on a vibrational study of the guanine-cytosine dimer tautomers using state-of-the-art quasiclassical trajectory and semiclassical vibrational spectroscopy. The latter includes possible quantum mechanical effects. Through an accurate comparison to the experimental spectra, we are able to shine a light on the hydrogen bond network of one of the main subunits of DNA and put the experimental assignment on a solid footing. Our calculations corroborate the experimental conclusion that the global minimum Watson-and-Crick structure is not detected in the spectra, and there is no evidence of tunnel-effect-based double proton hopping. Our accurate assignment of the spectral features may also serve as a basis for the development of precise force fields to study the guanine-cytosine dimer.
Keyphrases
  • density functional theory
  • single molecule
  • high resolution
  • molecular dynamics
  • molecular dynamics simulations
  • optical coherence tomography
  • energy transfer
  • magnetic resonance
  • cell free
  • transition metal