OPLS/2020 Force Field for Unsaturated Hydrocarbons, Alcohols, and Ethers.
William L JorgensenMohammad M GhahremanpourAnastasia SaarJulian Tirado-RivesPublished in: The journal of physical chemistry. B (2023)
The OPLS all-atom force field was updated and applied to modeling unsaturated hydrocarbons, alcohols, and ethers. Testing has included gas-phase conformational energetics, properties of pure liquids, and free energies of hydration. Monte Carlo statistical mechanics (MC) calculations were used to model 60 liquids. In addition, a robust, automated procedure was devised to compute the free energies of hydration with high precision via free-energy perturbation (FEP) calculations using double annihilation. Testing has included larger molecules than in the past, and parameters are reported for the first time for some less common groups including alkynes, allenes, dienes, and acetals. The average errors in comparison with experimental data for the computed properties of the pure liquids were improved with the modified force field (OPLS/2020). For liquid densities and heats of vaporization, the average unsigned errors are 0.01 g/cm 3 and 0.2 kcal/mol. The average error and signed error for free energies of hydration are both 1.2 kcal/mol. As noted before, this reflects a systematic overestimate of the hydrophobicity of organic molecules when the parametrization is done to minimize the errors for properties of pure liquids. Implications for the modeling of biomolecular systems with standard force fields are considered.
Keyphrases
- density functional theory
- single molecule
- monte carlo
- molecular dynamics
- molecular dynamics simulations
- patient safety
- adverse drug
- high throughput
- electronic health record
- computed tomography
- magnetic resonance imaging
- emergency department
- ionic liquid
- magnetic resonance
- artificial intelligence
- water soluble
- diffusion weighted imaging