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Molecular dynamics study of the interactions between a hydrophilic polymer brush on graphene and amino acid side chain analogues in water.

Takuma YagasakiNobuyuki Matubayasi
Published in: Physical chemistry chemical physics : PCCP (2022)
We perform all-atom molecular dynamics simulations of poly(2-hydroxyethyl methacrylate) (PHEMA) brushes in aqueous solutions of isobutane, propionamide, and sodium propionate. These solutes are side chain analogues to leucine, glutamine, and glutamic acid, respectively. We compute the Gibbs energy profile of the solute's adsorption to the polymer brush and decompose it into the contributions from the steric repulsion, van der Waals interaction, and Coulomb interaction to reveal the energetic origin of repulsion or attraction of the solute by the polymer brush. The Henry adsorption constant is the amount of adsorption normalized by the concentration in aqueous solution. We examine the dependence of this quantity on the grafting density and chain length. Our results suggest that the concurrent primary and ternary adsorption mechanism may be more important than previously expected when the solute is hydrophobic.
Keyphrases
  • aqueous solution
  • molecular dynamics
  • molecular dynamics simulations
  • molecular docking
  • density functional theory
  • amino acid
  • gene expression
  • genome wide
  • single cell
  • squamous cell carcinoma
  • mass spectrometry