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Capturing the dynamic association between a tris-dipicolinate lanthanide complex and a decapeptide: a combined paramagnetic NMR and molecular dynamics exploration.

Sandrine Denis-QuanquinAlessio BartocciFlorence SzczepaniakFrançois RiobéOlivier MauryElise DumontNicolas Giraud
Published in: Physical chemistry chemical physics : PCCP (2021)
In the realm of biomolecules, peptides can present a large diversity of structures. Our study sheds new light on the structural interplay between a tris-dipicolinate lanthanide probe and a decapeptide SASYKTLPRG. Although a rather trivial, electrostatically driven interaction was expected, the combination of paramagnetic NMR and molecular dynamics simulations reveals a highly dynamic association process and allows for providing extensive insights into the interaction sites and their occupancy. This study highlights the importance of a large conformational sampling to reconcile characteristic time in NMR with molecular dynamics simulations, where sampling in the microsecond range is needed. This study opens the door for a detailed mechanistic elucidation of the early steps of lanthanide complex-peptide or lanthanide complex-protein interaction or self-assembly processes.
Keyphrases
  • molecular dynamics simulations
  • molecular dynamics
  • magnetic resonance
  • high resolution
  • single molecule
  • molecular docking
  • metal organic framework
  • solid state
  • energy transfer
  • mass spectrometry
  • protein protein