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YSMR: a video tracking and analysis program for bacterial motility.

Julian SchwanbeckInes OehmigJerôme DretzkeAndreas E ZautnerUwe GroßWolfgang Bohne
Published in: BMC bioinformatics (2020)
In contrast to existing video tracking software, which either requires expensive computer hardware or only tracks a limited number of bacteria for a few seconds, YSMR is an open-source program which allows the 2-D tracking of several hundred objects over at least 5 minutes on standard computer hardware. The code is freely available at https://github.com/schwanbeck/YSMR.
Keyphrases
  • quality improvement
  • deep learning
  • magnetic resonance
  • biofilm formation
  • escherichia coli
  • staphylococcus aureus
  • data analysis
  • candida albicans