Transcriptome of Russet Norkotah and its clonal selection, TXNS278.

Julien Gad LevyCecilia TamborindeguyGiridhar AthreyDouglas C ScheuringJeffrey W KoymJ Creighton Miller

Published in: BMC research notes (2018)

In this report, we used RNA-seq, which allows genome-wide gene expression analysis to sequence the transcriptomes of the subclonal Russet Norkotah selection TXNS278 with standard Russet Norkotah grown in commercial fields. Among the selections, TXNS278 appeared in a multi-year analysis in Texas as a top No 1 yielding variety. Russet Norkotah and TXNS278 leaf and root transcriptomes were sequenced at two time points during growing season.

Keyphrases

rna seq
single cell
genome wide
dna methylation
genome wide identification
copy number
gene expression
transcription factor
data analysis