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Whole-genome sequence and annotation of Penstemon davidsonii.

Kate L OstevikMagdy S AlabadyMengrui ZhangMark D Rausher
Published in: G3 (Bethesda, Md.) (2024)
Penstemon is the most speciose flowering plant genus endemic to North America. Penstemon species' diverse morphology and adaptation to various environments have made them a valuable model system for studying evolution. Here, we report the first full reference genome assembly and annotation for Penstemon davidsonii. Using PacBio long-read sequencing and Hi-C scaffolding technology, we constructed a de novo reference genome of 437,568,744 bases, with a contig N50 of 40 Mb and L50 of 5. The annotation includes 18,199 gene models, and both the genome and transcriptome assembly contain over 95% complete eudicot BUSCOs. This genome assembly will serve as a valuable reference for studying the evolutionary history and genetic diversity of the Penstemon genus.
Keyphrases
  • genome wide
  • genetic diversity
  • rna seq
  • single cell
  • dna methylation
  • copy number
  • gene expression
  • genome wide identification