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The complete chloroplast genome of Callicarpa dichotoma (Lour.) K.Koch (Lamiaceae).

Quynh Chi PhanRyohei NagasakiYuya InoueHiromi Tsubota
Published in: Mitochondrial DNA. Part B, Resources (2023)
Callicarpa dichotoma (Lour.) K.Koch is a shrub species with distribution from East Asia to Southeast Asia. We assembled and annotated for the first time the complete chloroplast (cp) genome of C. dichotoma . The cp genome of C. dichotoma is 154,110 bp long with the GC content of 38.09% and consists of four subregions: a large single-copy (LSC) region of 84,915 bp, a small single-copy (SSC) region of 17,783 bp and a pair of inverted repeats (IRs) of 25,706 bp each. The cp genome of C. dichotoma encodes a total of 114 unique genes, comprising 80 protein-coding genes, 30 tRNA genes, and four rRNA genes. Phylogenetic trees based on the coding sequences strongly support the position of C. dichotoma within the genus Callicarpa , confirming the previously reported monophyly of the genus.
Keyphrases
  • genome wide
  • dna methylation
  • bioinformatics analysis
  • genome wide identification
  • gene expression
  • genome wide analysis
  • arabidopsis thaliana
  • protein protein
  • small molecule
  • liquid chromatography