Draft genome sequences of three Xanthomonas translucens pathovar reference strains (pv. arrhenatheri, pv. poae and pv. phlei) with different specificities for forage grasses.
Lena HersemannDaniel WibbergFranco WidmerFrank-Jörg VorhölterKölliker RolandPublished in: Standards in genomic sciences (2016)
As causal agents of bacterial wilt in pastures and meadows, bacteria of the species Xanthomonas translucens are a serious issue in forage grass production. So far, only little is known about host-pathogen interactions at the molecular level and the lack of comprehensive genome data impeded targeted breeding strategies towards resistant forage grass cultivars. Here we announce the draft genome sequences of three grass-pathogenic Xanthomonas translucens pathotype strains, i.e. pv. arrhenatheri LMG 727, pv. poae LMG 728 and pv. phlei LMG 730 isolated from Arrhenatherum elatius (L.) P. Beauv. ex J. Presl & C. Presl (Switzerland), Poa trivialis L. (Switzerland) and Phleum pratense L. (Norway), respectively. The genomes of all three strains revealed a non-canonical type III secretion system and a set of 22 type III effectors as common virulence-related traits. Distinct inter-pathovar differences were observed for the lipopolysaccharide biosynthesis gene cluster and the presence of nonribosomal peptide synthetases.
Keyphrases
- type iii
- escherichia coli
- genome wide
- staphylococcus aureus
- pseudomonas aeruginosa
- toll like receptor
- machine learning
- inflammatory response
- gene expression
- single cell
- biofilm formation
- big data
- dna methylation
- immune response
- artificial intelligence
- deep learning
- transcription factor
- antimicrobial resistance
- drug induced