Identification of DNA mutations in gastric washes from gastric adenocarcinoma patients: Possible implications for liquid biopsies and patient follow-up.
Melissa Pool PizziThais Fernanda BartelliAdriane Graicer PelosofHelano Carioca FreitasMaria Dirlei BegnamiLais Lie Senda de AbrantesClaudia SztokfiszRenan ValierisFranciele Hinterholz KnebelLuiz Gonzaga Vaz CoelhoWilson Luiz da CostaFelipe J F CoimbraIsrael Tojal da SilvaMaria Galli de AmorimDiana Noronha NunesEmmanuel Dias-NetoPublished in: International journal of cancer (2019)
Whereas cancer patients have benefited from liquid biopsies, the scenario for gastric adenocarcinoma (GAC) is still dismal. We used next-generation deep sequencing of TP53-a highly mutated and informative gene in GAC-to assess mutations in tumor biopsies, plasma (PL) and stomach fluids (gastric wash-GW). We evaluated their potential to reveal tumor-derived mutations, useful for monitoring mutational dynamics at diagnosis, progression and treatment. Exon-capture libraries were constructed from 46 patients including tumor biopsies, GW and PL pre and post-treatment (196 samples), with high vertical coverage >8,000×. At diagnosis, we detected TP53 mutations in 15/46 biopsies (32.6%), 7/46 GW- (15.2%) and 6/46 PL-samples (13%). Biopsies and GW were concordant in 38/46 cases (82.6%) for the presence/absence of mutations and, furthermore, four GW-exclusive mutations were identified, suggesting tumor heterogeneity. Considering the combined analysis of GW and PL, TP53 mutations found in biopsies were also identified in 9/15 (60%) of cases, the highest detection level reported for GAC. Our study indicates that GW could be useful to track DNA alterations, especially if anchored to a comprehensive gene-panel designed for this malignancy.
Keyphrases
- end stage renal disease
- ultrasound guided
- ejection fraction
- chronic kidney disease
- newly diagnosed
- single cell
- squamous cell carcinoma
- genome wide
- prognostic factors
- wastewater treatment
- healthcare
- dna methylation
- circulating tumor
- single molecule
- cell free
- climate change
- radiation therapy
- case report
- risk assessment
- patient reported
- combination therapy
- loop mediated isothermal amplification