Predictive Modeling and Structure Analysis of Genetic Variants in Familial Hypercholesterolemia: Implications for Diagnosis and Protein Interaction Studies.
Asier Larrea-SebalShifa Jebari-BenslaimanUnai Galicia-GarciaAne San Jose-UrteagaKepa B UribeMartín CésarCésar MartínPublished in: Current atherosclerosis reports (2023)
In recent years, various bioinformatics tools have emerged as valuable resources for analyzing missense variants in FH-related genes. Tools such as REVEL, Varity, and CADD use diverse computational approaches to predict the impact of genetic variants on protein function. These tools consider factors such as sequence conservation, structural alterations, and receptor binding to aid in interpreting the pathogenicity of identified missense variants. While these predictive models offer valuable insights, the accuracy of predictions can vary, especially for proteins with unique characteristics that might not be well represented in the databases used for training. This review emphasizes the significance of utilizing bioinformatics tools for assessing the pathogenicity of FH-associated missense variants. Despite their contributions, a definitive diagnosis of a genetic variant necessitates functional validation through in vitro characterization or cascade screening. This step ensures the precise identification of FH-related variants, leading to more accurate diagnoses. Integrating genetic data with reliable bioinformatics predictions and functional validation can enhance our understanding of the genetic basis of FH, enabling improved diagnosis, risk stratification, and personalized treatment for affected individuals. The comprehensive approach outlined in this review promises to advance the management of this inherited disorder, potentially leading to better health outcomes for those affected by FH.
Keyphrases
- copy number
- genome wide
- intellectual disability
- amino acid
- dna methylation
- big data
- binding protein
- protein protein
- gene expression
- squamous cell carcinoma
- biofilm formation
- high resolution
- autism spectrum disorder
- electronic health record
- escherichia coli
- radiation therapy
- mass spectrometry
- locally advanced
- deep learning
- artificial intelligence
- virtual reality