The multi-protein targeting potential of bioactive syringin in inflammatory diseases: using molecular modelling and in-silico analysis of regulatory elements.
Vipendra Kumar SinghD C ThakurNaina RajakAnand MishraAnkur KumarRajanish GiriNeha GargPublished in: Journal of biomolecular structure & dynamics (2023)
Inflammation plays a crucial role in the onset or progression of a variety of acute and chronic diseases. Non-steroidal anti-inflammatory drugs (NSAIDs) are the only available FDA-approved therapy. The therapeutic outcome of NSAIDs is still finite due to off-target effects and extreme side effects on other vital organs. Bioactive syringin has been manifested to hold anti-osteoporosis, cardiac hypertrophy, alter autophagy, anti-cancer, neuro-preventive effects, etc. However, its multi-protein targeting potential in inflammation mostly remains unexplored. In the present work, we have checked the multi-protein targeting potential of bioactive glycoside syringin in inflammatory diseases. Based on the binding score of protein-ligand complexes, glycoside syringin scored greater than -7 kcal/mol against 12 inflammatory proteins. Our molecular dynamic simulation study (200 ns) confirmed that bioactive syringin remained inside the binding cavity of inflammatory proteins (JAK1, TYK2, and COX1) in a stable conformation. Further, our co-expression analysis suggests that these genes play an essential role in multiple pathways and are regulated by multiple miRNAs. Our study demonstrates that bioactive glycoside syringin might be a multi-protein targeting potential against inflammatory diseases and could be further investigated utilizing different preclinical approaches.Communicated by Ramaswamy H. Sarma.
Keyphrases
- oxidative stress
- anti inflammatory drugs
- protein protein
- binding protein
- amino acid
- cancer therapy
- stem cells
- human health
- gene expression
- intensive care unit
- transcription factor
- small molecule
- genome wide
- liver failure
- body composition
- mesenchymal stem cells
- hepatitis b virus
- molecular docking
- mass spectrometry
- zika virus
- single molecule
- respiratory failure
- bone marrow
- acute respiratory distress syndrome