LRTK: a platform agnostic toolkit for linked-read analysis of both human genome and metagenome.

Chao Yang Zhenmiao Zhang Yufen Huang Xuefeng Xie Herui Liao Jin Xiao Werner Pieter Veldsman Kejing Yin Xiao-Dong Fang Eric Lu Zhang

Published in: GigaScience (2024)

LRTK provides comprehensive and flexible modules along with an easy-to-use Python-based workflow for processing linked-read sequencing datasets, thereby filling the current gap in the field caused by platform-centric genome-specific linked-read data analysis tools.

Keyphrases

data analysis
single molecule
endothelial cells
high throughput
genome wide
single cell
rna seq
gene expression
induced pluripotent stem cells