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LRTK: a platform agnostic toolkit for linked-read analysis of both human genome and metagenome.

Chao YangZhenmiao ZhangYufen HuangXuefeng XieHerui LiaoJin XiaoWerner Pieter VeldsmanKejing YinXiao-Dong FangEric Lu Zhang
Published in: GigaScience (2024)
LRTK provides comprehensive and flexible modules along with an easy-to-use Python-based workflow for processing linked-read sequencing datasets, thereby filling the current gap in the field caused by platform-centric genome-specific linked-read data analysis tools.
Keyphrases
  • data analysis
  • single molecule
  • endothelial cells
  • high throughput
  • genome wide
  • single cell
  • rna seq
  • gene expression
  • induced pluripotent stem cells