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Spatial analyses of immune cell infiltration in cancer: current methods and future directions. A report of the International Immuno-Oncology Biomarker Working Group on Breast Cancer.

David B PageGlenn BroeckxChowdhury Arif JahangirSara VerbandtRajarsi R GuptaJeppe ThagaardReena KhiroyaZuzana KosKhalid AbduljabbarGabriela Acosta HaabBalazs AcsJonas S AlmeidaIsabel Alvarado-CabreroFarid Azmoudeh-ArdalanSunil BadveNurkhairul Bariyah BaharunEnrique R BellolioVydehi BheemarajuKim Rm BlenmanLuciana Botinelly Mendonça FujimotoOctavio BurguesMaggie Chon U CheangFrancesco CiompiLee Ad CooperAn CoosemansGermán CorredorFlavio Luis Dantas PortelaFrederik DemanSandra DemariaSarah N DudgeonMahmoud ElghazawyScott ElyClaudio Fernandez-MartínSusan FinebergStephen B FoxWilliam M GallagherJennifer M GiltnaneSacha GnjaticPaula I Gonzalez EricssonAnita GrigoriadisNiels HalamaMatthew G HannaAparna HarbhajankaAlexandros ChardasSteven N HartJohan HartmanStephen HewittAkira I HidaHugo M HorlingsZaheed HusainEvangelos HytopoulosSheeba IrshadEmiel Am JanssenMohamed KahilaTatsuki R KataokaKosuke KawaguchiDurga KharidehalAndrey I KhramtsovUmay KirazPawan KirtaniLiudmila L KodachKonstanty KorskiAnikó KovácsAnne-Vibeke LaenkholmCorinna Lang-SchwarzDenis LarsimontJochen K LennerzMarvin LerousseauXiaoxian LiAmy LyAnant MadabhushiSai K MaleyVidya Manur NarasimhamurthyDouglas K MarksElizabeth S McDonaldRavi MehrotraStefan MichielsFayyaz Ul Amir Afsar MinhasShachi MittalDavid A MooreShamim MushtaqHussain NighatThomas PapathomasFrederique Penault-LlorcaRashindrie D PereraChristopher J PinardJuan Carlos Pinto-CardenasGiancarlo PruneriLajos PusztaiArman RahmanNasir Mahmood RajpootBernardo Leon RapoportTilman T RauJorge Sergio Reis-FilhoJoana M RibeiroDavid L RimmAnne-Vincent SalomonManuel Salto-TellezJoel SaltzShahin SayedKalliopi P SiziopikouChristos SotiriouAlbrecht StenzingerMaher A SughayerDaniel SurFraser SymmansSunao TanakaTimothy TaxterSabine TejparJonas TeuwenE Aubrey ThompsonTrine TrammWilliam T TranJeroen van der LaakPaul J van DiestGregory E VergheseGiuseppe VialeMichael ViethNoorul WahabThomas WalterYannick WaumansHannah Y WenWentao YangYinyin YuanSylvia AdamsJohn Mark Seaverns BartlettSibylle LoiblCarsten DenkertPeter SavasSherene LoiRoberto SalgadoElisabeth Specht StovgaardGuray AkturkNajat Bouchmaa
Published in: The Journal of pathology (2023)
Modern histologic imaging platforms coupled with machine learning methods have provided new opportunities to map the spatial distribution of immune cells in the tumor microenvironment. However, there exists no standardized method for describing or analyzing spatial immune cell data, and most reported spatial analyses are rudimentary. In this review, we provide an overview of two approaches for reporting and analyzing spatial data (raster versus vector-based). We then provide a compendium of spatial immune cell metrics that have been reported in the literature, summarizing prognostic associations in the context of a variety of cancers. We conclude by discussing two well-described clinical biomarkers, the breast cancer stromal tumor infiltrating lymphocytes score and the colon cancer Immunoscore, and describe investigative opportunities to improve clinical utility of these spatial biomarkers. © 2023 The Pathological Society of Great Britain and Ireland.
Keyphrases
  • machine learning
  • systematic review
  • big data
  • electronic health record
  • high resolution
  • palliative care
  • squamous cell carcinoma
  • bone marrow
  • papillary thyroid
  • squamous cell
  • drug induced