Using pre-selected variants from large-scale whole-genome sequence data for single-step genomic predictions in pigs.

Sung Bong JangRoger Ros-FreixedesJohn M HickeyChing-Yi ChenJustin HollWilliam O HerringIgnacy MisztalDaniela Lourenco

Published in: Genetics, selection, evolution : GSE (2023)

The benefit of using sequence data depends on the line, the size of the genotyped population, and how the WGS variants are preselected. When WGS data are available on hundreds of thousands of animals, using sequence data presents an advantage but this remains limited in pigs.

Keyphrases

electronic health record
big data
copy number
gene expression
machine learning
dna methylation
deep learning