Activatable G-quadruplex based catalases for signal transduction in biosensing.
Elzbieta E IwaniukThuwebat AdebayoSeth ColemanCaitlin G VillarosIrina V NesterovaPublished in: Nucleic acids research (2023)
Discovery of oxidative catalysis with G-quadruplex•hemin constructs prompted a range of exciting developments in the field of biosensor design. Thus, G-quadruplex based DNAzymes with peroxidase activity found a niche as signal transduction modules in a wide range of analytical applications. The ability of nucleic acid scaffolds to recognise a variety of practically meaningful markers and to translate the recognition events into conformational changes powers numerous sensor design possibilities. In this work, we establish a catalase activity of G-quadruplex•hemin scaffolds. Catalase activated hydrogen peroxide decomposition generates molecular oxygen that forms bubbles. Observation of bubbles is a truly equipment free signal readout platform that is highly desirable in limited resources or do-it-yourself environments. We take a preliminary insight into a G-quadruplex structure-folding topology-catalase activity correlation and establish efficient operating conditions. Further, we demonstrate the platform's potential as a signal transduction modality for reporting on biomolecular recognition using an oligonucleotide as a proof-of-concept target. Ultimately, activatable catalases based on G-quadruplex•hemin scaffolds promise to become valuable contributors towards accessible molecular diagnostics applications.
Keyphrases
- hydrogen peroxide
- nucleic acid
- single molecule
- high throughput
- tissue engineering
- nitric oxide
- small molecule
- gold nanoparticles
- molecular dynamics simulations
- fluorescence imaging
- risk assessment
- climate change
- big data
- fluorescent probe
- quantum dots
- machine learning
- artificial intelligence
- mass spectrometry
- photodynamic therapy
- human health
- drug induced