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AutoMeKin2021: An open-source program for automated reaction discovery.

Emilio Martínez-NúñezGeorge L BarnesDavid R GlowackiSabine KopecDaniel PeláezAurelio RodríguezRoberto Rodríguez-FernándezRobin J ShannonJames J P StewartPablo G TahocesSaulo A Vazquez
Published in: Journal of computational chemistry (2021)
AutoMeKin2021 is an updated version of tsscds2018, a program for the automated discovery of reaction mechanisms (J. Comput. Chem. 2018, 39, 1922). This release features a number of new capabilities: rare-event molecular dynamics simulations to enhance reaction discovery, extension of the original search algorithm to study van der Waals complexes, use of chemical knowledge, a new search algorithm based on bond-order time series analysis, statistics of the chemical reaction networks, a web application to submit jobs, and other features. The source code, manual, installation instructions and the website link are available at: https://rxnkin.usc.es/index.php/AutoMeKin.
Keyphrases
  • high throughput
  • molecular dynamics simulations
  • machine learning
  • deep learning
  • small molecule
  • quality improvement
  • healthcare