Single-cell transcriptomics reveals cell-type-specific diversification in human heart failure.
Andrew L KoenigIrina ShchukinaJunedh M AmrutePrabhakar S AndheyKonstantin ZaitsevLulu LaiGeetika BajpaiAndrea L BredemeyerGabriella SmithCameran JonesEmily TerrebonneStacey L RentschlerMaxim N ArtyomovKory J LavinePublished in: Nature cardiovascular research (2022)
Heart failure represents a major cause of morbidity and mortality worldwide. Single-cell transcriptomics have revolutionized our understanding of cell composition and associated gene expression. Through integrated analysis of single-cell and single-nucleus RNA-sequencing data generated from 27 healthy donors and 18 individuals with dilated cardiomyopathy, here we define the cell composition of the healthy and failing human heart. We identify cell-specific transcriptional signatures associated with age and heart failure and reveal the emergence of disease-associated cell states. Notably, cardiomyocytes converge toward common disease-associated cell states, whereas fibroblasts and myeloid cells undergo dramatic diversification. Endothelial cells and pericytes display global transcriptional shifts without changes in cell complexity. Collectively, our findings provide a comprehensive analysis of the cellular and transcriptomic landscape of human heart failure, identify cell type-specific transcriptional programs and disease-associated cell states and establish a valuable resource for the investigation of human heart failure.
Keyphrases
- single cell
- rna seq
- heart failure
- endothelial cells
- gene expression
- high throughput
- cell therapy
- atrial fibrillation
- left ventricular
- public health
- transcription factor
- stem cells
- immune response
- dna methylation
- cell death
- machine learning
- mesenchymal stem cells
- bone marrow
- cell cycle arrest
- electronic health record
- signaling pathway
- cell proliferation
- heat shock