RSAtrace3D: robust vectorization software for measuring monocot root system architecture.

Shota TeramotoTakanari TanabataYusaku Uga

Published in: BMC plant biology (2021)

RSAtrace3D is an RSA vectorization software for 3D RSA phenotyping for monocots. Owing to the high expandability of the RSA vectorization and phenotyping algorithm, RSAtrace3D can be applied not only to rice in X-ray CT images but also to other monocots in various 3D images. Since this software is written in Python language, it can be easily modified and will be extensively applied by researchers in this field.

Keyphrases

deep learning
dual energy
convolutional neural network
high throughput
data analysis
optical coherence tomography
computed tomography
multidrug resistant
high resolution
autism spectrum disorder
image quality
contrast enhanced
magnetic resonance
mass spectrometry