Concurrent prediction of RNA secondary structures with pseudoknots and local 3D motifs in an integer programming framework.

Published in: Bioinformatics (Oxford, England) (2024)

The source code of the framework is available at https://gitlab.info.uqam.ca/cbe/RNAMoIP and an interactive web server at https://rnamoip.cbe.uqam.ca/.

Keyphrases

protein kinase
squamous cell carcinoma
protein protein
nucleic acid
radiation therapy
rectal cancer