Dissemination of OXA-48- and NDM-1-Producing Enterobacterales Isolates in an Algerian Hospital.
Amel AbderrahimNassima DjahmiLotfi LoucifSabrina NedjaiWidad ChelaghmaDjamila Gameci-KiraneMazouz DekhilJean-Philippe LavigneAlix PantelPublished in: Antibiotics (Basel, Switzerland) (2022)
Multidrug-resistant (MDR) Enterobacterales remain an increasing problem in Algeria, notably due to the emergence of carbapenemase producers. We investigated the molecular characteristics of carbapenem-resistant Enterobacterales isolates recovered from outpatients and inpatients in Eastern Algeria. Non-repetitive Enterobacterales with reduced susceptibility to carbapenems were consecutively collected from clinical specimens in Annaba University Hospital (Algeria) between April 2016 and December 2018. Isolates were characterized with regard to antibiotic resistance, resistome and virulome content, clonality, and plasmid support. Of the 168 isolates analyzed, 29 (17.3%) were carbapenemase producers and identified as K. pneumoniae ( n = 23), E. coli ( n = 5), and E. cloacae ( n = 1). bla OXA-48 was the most prevalent carbapenemase-encoding gene ( n = 26/29), followed by bla NDM-1 gene ( n = 3/29). K. pneumoniae isolates harbored some virulence traits ( entB , ugeF , ureA , mrkD , fimH ), whereas E. coli had a commensal origin (E, A, and B1). Clonality analysis revealed clonal expansions of ST101 K. pneumoniae and ST758 E. coli . Plasmid analysis showed a large diversity of incompatibility groups, with a predominance of IncM ( n = 26, 89.7%). A global dissemination of OXA-48-producing Enterobacterales in the Algerian hospital but also the detection of NDM-1-producing E. coli in community settings were observed. The importance of this diffusion must be absolutely investigated and controlled.
Keyphrases
- klebsiella pneumoniae
- escherichia coli
- multidrug resistant
- genetic diversity
- acinetobacter baumannii
- biofilm formation
- healthcare
- drug resistant
- genome wide
- gram negative
- copy number
- gene expression
- dna methylation
- crispr cas
- south africa
- acute care
- single cell
- single molecule
- pseudomonas aeruginosa
- mass spectrometry
- high speed
- candida albicans
- genome wide identification
- electronic health record