NanoDJ: a Dockerized Jupyter notebook for interactive Oxford Nanopore MinION sequence manipulation and genome assembly.

Héctor Rodríguez-PérezTamara Hernández-BeeftinkJosé M Lorenzo-SalazarJosé L Roda-GarcíaCarlos J Pérez-GonzálezMarcos ColebrookCarlos Flores

Published in: BMC bioinformatics (2019)

With the use of Jupyter-facilitated access to self-explanatory contents of applications and the interactive visualization of results, as well as by its distribution into a Docker software container, NanoDJ is aimed to simplify and make more reproducible ONT DNA sequence analysis. The NanoDJ package code, documentation and installation instructions are freely available at https://github.com/genomicsITER/NanoDJ .

Keyphrases

single molecule
circulating tumor
electronic health record
genome wide
gene expression
data analysis
advance care planning
nucleic acid
circulating tumor cells