Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita.

Clémence MedinaMartine da RochaMarc MaglianoAlizée RaptopouloNathalie MarteuKevin LebrigandPierre AbadBruno FaveryStéphanie Jaubert-Possamai

Published in: BMC genomics (2018)

Correlation of siRNA clusters expression profile with transcriptomic data identified several protein coding genes that are candidates to be regulated by siRNAs at the transcriptional level by RNA directed DNA methylation (RdDM) pathway either directly or indirectly via silencing of neighbouring transposable elements.

Keyphrases

arabidopsis thaliana
dna methylation
genome wide
gene expression
electronic health record
single cell
transcription factor
big data
cancer therapy
protein protein
rna seq
copy number
amino acid
machine learning
bioinformatics analysis
nucleic acid
heat shock
drug delivery