Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.
Phuwanat SakornsakolpatDmitry ProkopenkoMaxime LamontagneNicola F ReeveAnna L GuyattVictoria E JacksonNick ShrineDandi QiaoTraci M BartzDeog Kyeom KimMi Kyeong LeeJeanne C LatourelleXingnan LiJarrett D MorrowMa'en ObeidatAnnah B WyssPer BakkeR Graham BarrTerri H BeatySteven A BelinskyGuy G BrusselleJames D CrapoKim de JongDawn L DeMeoTasha E FingerlinSina A GharibAmund GulsvikIan P HallJohn E HokansonWoo Jin KimDavid A LomasStephanie J LondonDeborah A MeyersGeorge T O'ConnorStephen I RennardDavid A SchwartzPawel SliwinskiDavid SparrowDavid P StrachanRuth Tal-SingerYohannes TesfaigziJørgen VestboJudith M VonkJae-Joon YimXiaobo ZhouYohan BosséAni ManichaikulLies LahousseEdwin K SilvermanH Marike BoezenLouise V WainMartin D TobinBrian D HobbsMichael H Chonull nullnull nullPublished in: Nature genetics (2019)
Chronic obstructive pulmonary disease (COPD) is the leading cause of respiratory mortality worldwide. Genetic risk loci provide new insights into disease pathogenesis. We performed a genome-wide association study in 35,735 cases and 222,076 controls from the UK Biobank and additional studies from the International COPD Genetics Consortium. We identified 82 loci associated with P < 5 × 10-8; 47 of these were previously described in association with either COPD or population-based measures of lung function. Of the remaining 35 new loci, 13 were associated with lung function in 79,055 individuals from the SpiroMeta consortium. Using gene expression and regulation data, we identified functional enrichment of COPD risk loci in lung tissue, smooth muscle, and several lung cell types. We found 14 COPD loci shared with either asthma or pulmonary fibrosis. COPD genetic risk loci clustered into groups based on associations with quantitative imaging features and comorbidities. Our analyses provide further support for the genetic susceptibility and heterogeneity of COPD.
Keyphrases
- lung function
- chronic obstructive pulmonary disease
- genome wide
- genome wide association study
- cystic fibrosis
- air pollution
- dna methylation
- gene expression
- smooth muscle
- genome wide association
- copy number
- single cell
- high resolution
- stem cells
- type diabetes
- mesenchymal stem cells
- pulmonary fibrosis
- electronic health record
- bone marrow