Supramolecular Hydrolase Mimics in Equilibrium and Kinetically Trapped States.
Jing ChenKe ShiRongjing ChenZhaoyi ZhaiPeiyong SongLesley W ChowRona ChandrawatiE Thomas PashuckFang JiaoYiyang LinPublished in: Angewandte Chemie (International ed. in English) (2024)
The folding of proteins into intricate three-dimensional structures to achieve biological functions, such as catalysis, is governed by both kinetic and thermodynamic controls. The quest to design artificial enzymes using minimalist peptides seeks to emulate supramolecular structures existing in a catalytically active state. Drawing inspiration from the nuanced process of protein folding, our study explores the enzyme-like activity of amphiphilic peptide nanosystems in both equilibrium and non-equilibrium states, featuring the formation of supramolecular nanofibrils and nanosheets. In contrast to thermodynamically stable nanosheets, the kinetically trapped nanofibrils exhibit dynamic characteristics (e.g., rapid molecular exchange and relatively weak intermolecular packing), resulting in a higher hydrolase-mimicking activity. We emphasize that a supramolecular microenvironment characterized by an optimal local polarity, microviscosity, and β-sheet hydrogen bonding is conducive to both substrate binding and ester bond hydrolysis. Our work underscores the pivotal role of both thermodynamic and kinetic control in impacting biomimetic catalysis and sheds a light on the development of artificial enzymes.
Keyphrases
- molecular dynamics simulations
- energy transfer
- aqueous solution
- molecular dynamics
- water soluble
- single molecule
- quantum dots
- visible light
- high resolution
- reduced graphene oxide
- amino acid
- magnetic resonance
- transition metal
- computed tomography
- metal organic framework
- magnetic resonance imaging
- mass spectrometry
- transcription factor
- contrast enhanced
- structural basis