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Guide for library design and bias correction for large-scale transcriptome studies using highly multiplexed RNAseq methods.

Shintaro KatayamaTiina SkoogCilla SöderhällElisabet EinarsdottirKaarel KrjutškovJuha Kere
Published in: BMC bioinformatics (2019)
The R source code for the library bias correction named NBGLM-LBC is available at https://shka.github.io/NBGLM-LBC and https://shka.bitbucket.io/NBGLM-LBC . This method is applicable to correct the library biases in various studies that use highly multiplexed sequencing-based profiling methods with a consistent sample layout with samples to be compared (e.g., "cases" and "controls") equally distributed in each library.
Keyphrases
  • single cell
  • rna seq
  • case control
  • gene expression