AssemblyQC: a Nextflow pipeline for reproducible reporting of assembly quality.

Usman RashidChen WuJason ShillerKen SmithRoss CrowhurstMarcus DavyTing-Hsuan ChenIgnacio CarvajalSarah BaileySusan ThomsonCecilia Hong Deng

Published in: Bioinformatics (Oxford, England) (2024)

The pipeline uses Nextflow for workflow orchestration and adheres to the best-practice established by the nf-core community. This pipeline offers a reproducible, scalable, and portable method to assess the quality of genome assemblies-the code is available online at GitHub: https://github.com/Plant-Food-Research-Open/assemblyqc.

Keyphrases

healthcare
quality improvement
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signaling pathway
mental health
oxidative stress
lps induced
emergency department
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nuclear factor
human health