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Satellitome Analysis in the Southern Lapwing ( Vanellus chilensis ) Genome: Implications for SatDNA Evolution in Charadriiform Birds.

Rafael KretschmerGustavo Akira TomaGeize Aparecida DeonNatalia Dos SantosRodrigo Zeni Dos SantosRicardo UtsunomiaFabio Porto-ForestiRicardo José GunskiAnalía Del Valle GarneroThomas LiehrEdivaldo Herculano Correia de OliveiraThales Renato Ochotorena de FreitasMarcelo de Bello Cioffi
Published in: Genes (2024)
Vanellus (Charadriidae; Charadriiformes) comprises around 20 species commonly referred to as lapwings. In this study, by integrating cytogenetic and genomic approaches, we assessed the satellite DNA (satDNA) composition of one typical species, Vanellus chilensis , with a highly conserved karyotype. We additionally underlined its role in the evolution, structure, and differentiation process of the present ZW sex chromosome system. Seven distinct satellite DNA families were identified within its genome, accumulating on the centromeres, microchromosomes, and the W chromosome. However, these identified satellite DNA families were not found in two other Charadriiformes members, namely Jacana jacana and Calidris canutus . The hybridization of microsatellite sequences revealed the presence of a few repetitive sequences in V. chilensis , with only two out of sixteen displaying positive hybridization signals. Overall, our results contribute to understanding the genomic organization and satDNA evolution in Charadriiform birds.
Keyphrases
  • single molecule
  • circulating tumor
  • copy number
  • nucleic acid
  • cell free
  • genetic diversity
  • genome wide
  • transcription factor
  • high frequency
  • dna methylation
  • circulating tumor cells