Optical Torque Calculations and Measurements for DNA Torsional Studies.
Yifeng HongFan YeJin QianXiang GaoJames T InmanMichelle D WangPublished in: bioRxiv : the preprint server for biology (2024)
We developed a simulation platform based on the finite element method for force and torque calculation for particles in an angular optical trap (AOT), with considerations of tightly focused Gaussian beam, spherical aberrations, and optically anisotropic particles. Experimental measurements of focal shift ratio, force, and torque under multiple conditions were in good agreement with predictions from the simulations. We also demonstrated that intrinsic DNA torsional properties can be robustly measured under different AOT measurement conditions, strongly validating our simulations and calibrations. Our platform can facilitate trapping particle design for single-molecule assays using the AOT.