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The complete chloroplast genome sequence of Solanum hougasii, one of the potato wild relative species.

Kwang-Soo ChoJi-Hong ChoJu-Sung ImJang-Gyu ChoiYoung-Eun ParkDong-Chil JangSu-Young HongTae-Ho Park
Published in: Mitochondrial DNA. Part B, Resources (2018)
Solanum hougasii is a wild tuber-bearing species belonging to the family Solanaceae. The complete chloroplast genome of S. hougasii was constituted by de novo assembly, using a small amount of whole genome sequencing data. The chloroplast genome of S. hougasii was a circular DNA molecule with a length of 155,549 bp and consisted of 85,990 bp of large single copy, 18,373 bp of small single copy, and 25,593 bp of a pair of inverted repeat regions. A total of 158 genes were annotated, including 105 protein-coding genes, 45 tRNA genes, and eight rRNA genes. Maximum likelihood phylogenetic analysis with 25 Solanaceae species revealed that S. hougasii is most closely grouped with S. tuberosum.
Keyphrases
  • genome wide
  • bioinformatics analysis
  • genome wide identification
  • genetic diversity
  • dna methylation
  • genome wide analysis
  • gene expression
  • small molecule
  • transcription factor
  • big data
  • single cell
  • cell free