StemnesScoRe: an R package to estimate the stemness of glioma cancer cells at single-cell resolution.
Necla KochanYavuz OktayGökhan KarakülahPublished in: Turkish journal of biology = Turk biyoloji dergisi (2023)
scATAC-seq can be used to assess heterogeneity in glioblastoma and identify cells with high stemness characteristics. The package is publicly available at https://github.com/Necla/StemnesScoRe and includes documentation with implementation of a real-data experiment.
Keyphrases
- single cell
- rna seq
- stem cells
- electronic health record
- induced apoptosis
- epithelial mesenchymal transition
- high throughput
- cell cycle arrest
- primary care
- healthcare
- endoplasmic reticulum stress
- genome wide
- oxidative stress
- quality improvement
- gene expression
- dna methylation
- pi k akt
- advance care planning
- data analysis