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Seamless integration of image and molecular analysis for spatial transcriptomics workflows.

Joseph BergenstråhleLudvig LarssonJoakim Lundeberg
Published in: BMC genomics (2020)
STUtility lets the user process, analyze and visualize multiple samples of spatially resolved RNA sequencing and image data from the 10x Genomics Visium platform. The package builds on the Seurat framework and uses familiar APIs and well-proven analysis methods. An introduction to the software package is available at https://ludvigla.github.io/STUtility_web_site/ .
Keyphrases
  • single cell
  • deep learning
  • high throughput
  • data analysis
  • big data